DreEX6015790 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16798904-16807182:+
Coord C1 exon
chr3:16798904-16799116
Coord A exon
chr3:16806301-16806451
Coord C2 exon
chr3:16807043-16807182
Length
151 bp
Sequences
Splice sites
3' ss Seq
AATCACTCCATTTCATGCAGGAG
3' ss Score
5.68
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGCTGAACCAGACAGAGGATCACAGGCAGCGTGTTTTGCAGGCAGCTGCCAAAACTGTCCGAGTGTGGTTCATCAAGGTCCGCAAGATGAAAGCCATTTATCACACACTCAACCTCTGCAACATTGATGTCACCCAGAAGTGTCTGATCGCTGAGATCTGGTGCCCTGTGTCCGATCTAGACTCCATTCAGTTTGCACTCCGTCGTGGCACG
Seq A exon
GAGAGAAGTGGATCCACCGTTCCCTCCATCCTGAACAGAATGCAGACCAAACAGACGCCCCCCACCTACAACAAAACCAACAAGTTCACCTCTGGCTTTCAGAGTATCGTTGATGCATACGGCATCAGCAACTACCGGGAGATGAACCCAG
Seq C2 exon
CTCCATACACCATCATCACCTTCCCCTTCCTGTTTGCGGTCATGTTTGGTGATCTGGGTCACGGCGTGCTCATGACCTGTGCTGCACTTTATCTGGTACTGCGAGAGAGCCGATTAATTGCCCAGAAAAATGACAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(8.8=100)
A:
PF0149614=V_ATPase_I=FE(6.2=100)
C2:
PF0149614=V_ATPase_I=FE(5.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAAAACTGTCCGAGTGT
R:
AAGTGCAGCACAGGTCATGAG
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]