DreEX6017180 @ danRer10
Exon Skipping
Gene
ENSDARG00000001803 | kcnh6a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6a [Source:ZFIN;Acc:ZDB-GENE-040702-5]
Coordinates
chr3:31609456-31627385:-
Coord C1 exon
chr3:31627183-31627385
Coord A exon
chr3:31610143-31610568
Coord C2 exon
chr3:31609456-31609873
Length
426 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCCTCTACCCTTAGGTC
3' ss Score
12.31
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATCTAAAGCCCAGTAATTTGAACTCCACATCAGACTCTGATTTGATGCGGCACCGCACAATTGGCCGCATCCCTCAGGTGACGATATCCTTCGGCTCGGACCGCCTCAGACCACCTTCCCCTACTGAGATCGAAATCATCGCACCCAGCAAGATTAAAGACCGCTCACAGAACGTCTCAGAAAAGGTCACTCAAGTTACGCAG
Seq A exon
GTCCTGTCACTCGGGGCAGATGTGCTTCCGGAGTACAAGCTTCAAGCTCCCCGCATCCACAAATGGACAATCCTGCACTACAGCCCGTTCAAGGCGGTGTGGGACTGGATCATCCTGCTGCTGGTGCTCTACACGGCCGTCTTCACGCCATATTCAGCCGCGTTCCTCCTCAACGAGCAGGAGGATGAGAGAAGACGCACCTGTGGCTACACCTGCAACCCTCTGAACGTGGTGGACCTGGTGGTGGACGTCATGTTCATCATCGACATCCTCATCAACTTCAGGACCACATACGTCAATCACAACGACGAGGTGGTCAGCAACCCTGCCCGCATCGCTCAGCACTACTTCAAGGGCTGGTTCCTCATAGACATAGTTGCTGCCATCCCCTTCGACCTGCTCATTTTCAGATCCGGTTCAGATGAG
Seq C2 exon
CCTCAAACCACCACTCTGATTGGTCTGCTGAAGACTGCACGGCTGCTGCGACTGGTGCGAGTAGCGAGAAAACTGGACCGTTACTCTGAGTATGGAGCGGCGGTGCTCTTCCTCCTCATGTGCACCTTTGCTCTCATCGCCCACTGGCTGGCATGCATCTGGTACGCCATTGGCAATATGGAGCGCACCAGCTCTGCCCGCATAGGAGGCATGAAGATCGGCTGGCTGGACAACTTAGCTGACCAAATTGGCAAGCAGTACAATGACAGCAACAGTTTCTCTGGCCCCTCCATCAAGGACAAATATGTTACTGCATTGTACTTCACCTTCAGTAGCTTGACCAGTGTGGGCTTCGGAAATGTCTCTCCAAACACCAACCCTGAGAAGATTTTCTCCATTTGCGTCATGCTTATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001803-'5-8,'5-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=37.3),PF0052026=Ion_trans=PU(30.1=45.8)
C2:
PF0052026=Ion_trans=FE(64.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGACCACCTTCCCCTAC
R:
GGTCAGCTAAGTTGTCCAGCC
Band lengths:
344-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]