GgaEX6027282 @ galGal3
Exon Skipping
Gene
ENSGALG00000000505 | KCNH6
Description
NA
Coordinates
chr27:2597678-2603403:+
Coord C1 exon
chr27:2597678-2597889
Coord A exon
chr27:2601835-2602263
Coord C2 exon
chr27:2603004-2603403
Length
429 bp
Sequences
Splice sites
3' ss Seq
TCATGCCCATCTCCTGGCAGGTG
3' ss Score
10.74
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
AGGCTTCCCACGTGAAACCCAACCCTCCAAACTCCACCTCAGACTCGGACCTCATGAAGTACCGCACCATCAGCCAGATCCCCCAGTTCACCCTCAACTTCGTAGAGTTCAACCTGGAGAAGCACCGCTCGGGCTCCACCACGGAGATTGAGATCATTGCACCCCACAAAGTGACGGAGCGCACGCAGAACGTCACCGAGAAGGTCACACAG
Seq A exon
GTGCTGTCCCTGGGGGCTGATGTCCTCCCCGAGTACAAGCTCCAGGCACCACGCATCCATCGATGGACCATCCTGCACTACAGTCCCTTCAAGGCCGTGTGGGATTGGCTCATCCTGCTGCTGGTCATCTACACGGCTGTCTTCACCCCCTACTCAGCCGCCTTCCTGCTCAATGAGGAGCAGGGGGAGGAGAAGCACTGGAACTGCAGCTACTCCTGTGACCCACTCAACATCATCGACCTCATCGTGGACATCATGTTCATCGTGGACATTGTCATCAACTTCCGCACCACCTACGTCAACATCAACGACGAGGTGGTGAGCCACCCGGGCAAGATTGCCATCCACTACTTCAAGGGCTGGTTCCTCATTGACATGGTGGCTGCCATCCCCTTTGATCTGCTCATCTTCCGCTCCGGCTCTGACGAG
Seq C2 exon
ACCACCACCCTCATCGGTCTCCTGAAGACCGCCCGGCTGCTGCGCCTGGTCCGTGTGGCCCGCAAGCTGGACCGCTACTCCGAGTACGGAGCAGCTGTGCTCTTCCTGCTCATGTGCACCTTTGCCCTCATCGCCCACTGGCTGGCGTGCATCTGGTATGCCATTGGCAACGTGGAGCGGCCCTACATGGAGCATAAGATCGGCTGGCTGGACAACCTGGGTGACCAGATCGGCAAGCGTTACAATGACAGCGACCTCTCCTCTGGGCCATCCATCAAGGATAAATACGTCACTGCCCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGCAACGTCTCGCCCAACACCAACTCTGAGAAGATCTTCTCCATCTGCGTCATGCTCATCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.0=45.5)
C2:
PF0052026=Ion_trans=FE(63.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTTCACCCTCAACTTCG
R:
GTCCAGCCAGCCGATCTTATG
Band lengths:
344-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]