BtaEX6089532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48497437-48502894:+
Coord C1 exon
chr19:48497437-48497642
Coord A exon
chr19:48500824-48501249
Coord C2 exon
chr19:48502740-48502894
Length
426 bp
Sequences
Splice sites
3' ss Seq
TGCCCGGTCCCCACCCCCAGGTC
3' ss Score
10.7
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGGCTCTCACGGCAGGTCGGGGGCACAGGGGCCTGGCGCAGGCAGGGTCAAGTACAGGACCATCAGCCAGATCCCGCAGTTCACACTCAACTTTGTGGAGTTCAACCTGGAGAAGCACCGCTCGGGCTCCACCACAGAGATTGAGATCATCGCACCCCACAAGGTGGTGGAGCGGACCCAGAACGTCACCGAGAAGGTCACCCAG
Seq A exon
GTCCTGTCCCTGGGAGCGGACGTGCTGCCAGAGTACAAGCTGCAGGCCCCTCGCATCCACCGGGGGACCCTCCTGCACTACAGCCCATTCAAGGCCGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACGGCCGTCTTCACGCCCTACTCAGCCGCCTTCCTGCTCAGCGACCAGGATGAGTCTCAGCGCGGGGACTGCGGCTACACCTGCAGCCCGCTCACCGTGGTGGACCTCATCGTGGACATCATGTTCGTGGTGGACATCGTCATCAACTTCCGCACCACCTACGTCAACACCAATGACGAGGTGGTCAGCCACCCCCGGCGCATCGCCGTCCACTACTTCAAGGGCTGGTTCCTCATCGACATGGTGGCCGCCATCCCCTTCGACCTGCTCATCTTCCGCACCGGCTCTGATGAG
Seq C2 exon
ACCACAACCCTGATTGGACTGCTGAAGACAGCGCGGCTGCTGCGGCTGGTGCGTGTGGCTCGGAAGCTAGACCGCTACTCTGAGTATGGGGCGGCCGTGCTCTTCCTGCTCATGTGCACCTTTGCGCTCATCGCGCACTGGCTGGCCTGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(54.6=45.8)
C2:
PF0052026=Ion_trans=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCTCACGGCAGGT
R:
CAGCCAGTGCGCGATGAG
Band lengths:
350-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]