DreEX6067949 @ danRer10
Exon Skipping
Gene
ENSDARG00000010296 | kcnh6b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6b [Source:ZFIN;Acc:ZDB-GENE-121214-55]
Coordinates
chr12:9282940-9291439:+
Coord C1 exon
chr12:9282940-9283133
Coord A exon
chr12:9286797-9287222
Coord C2 exon
chr12:9291040-9291439
Length
426 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTTTCCACACACAGGTA
3' ss Score
9.3
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GCTTGAAGAGCAGTTTGAGGAACTCCAGAACTTCCAGCTCTGAGCGGATGAAAGCTTTAAACAGGTTCCATTCATTCCGTCTAAACCTGCGTCGACCCAGAAGATCCAACCCCTCCACAGCACACTCCAATATTGAGCTGGTTACCCCGAAAGTGAAGGAACGCACACAGAATGTGACAGAGAAGGTCACACAG
Seq A exon
GTACTGTCTTTAGGTGCTGATGTCTTGCCTGAGTACAAGCTCCAGGCTCCAGACGTCCACAAGTGGATAATGTTGCACTACAGTCCGTTCAAAGCCATATGGGACTGGGTCATCCTCCTGCTAGTGCTCTACACTGCTGTCTTCACTCCCTTTTCAGCTGCTTTCCTCCTCAATGAACTCGAGGATGAGAGGAGACAGACCTGCGGGTACACCTGTAACCCTTTAAACGTGGTTGACGTGATAGTGGACGTTCTGTTCATCGCAGACATCGTGATTACCTTCAGGACGACGTACGTGAATCACAATGATGAGGTGGTGACCCATCCCAAGCGCATCGCTATACATTATATCAAAGGCTGGTTTTTCATCGACATGGTGGCTGCAATTCCTTTTGATCTGCTCATCTTCAGGTCTGGATCAGATGAG
Seq C2 exon
CAGACAACAGCCACTCTGATTGGCTTGCTGAAGACAGCCCGTCTGCTCCGGTTGGTCCGTGTAGCCAGAAAATTAGATCGATATTCAGAGTATGGAGCTGCAGTCCTTTTCTTGCTCATGTGCACCTTCGGGCTGATCGCTCATTGGTTGGCATGTATCTGGTATGCCATTGGCCATGTGGAGAGGCCATACATGAAAACAGGCTGGCTGGATAACCTGGCCGATCAACTAGGGAAACGTTACAACGACAGCGATGCTAGCTCAGGACCCTCCATTCAGGATAAATACATCACTGCGCTCTATTTCACCTTCAGCAGTCTGACCAGCGTGGGCTTTGGGAACGTCTCTCCAAACACCAACTCTGAGAAAATGTTTTCTATCTGCGTCATGTTCATCGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010296-'0-2,'0-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.1=45.5)
C2:
PF0052026=Ion_trans=FE(63.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGACCCAGAAGATCCAAC
R:
CGTTTCCCTAGTTGATCGGCC
Band lengths:
344-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]