RnoEX6012227 @ rn6
Exon Skipping
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7375732-7381484:+
Coord C1 exon
chr4:7375732-7375943
Coord A exon
chr4:7380217-7380645
Coord C2 exon
chr4:7381097-7381484
Length
429 bp
Sequences
Splice sites
3' ss Seq
CCTCGTCACCCACACCTTAGGTC
3' ss Score
7.01
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GGGCCATGCACCCCCTGCGCAGTGGCCTGCTTAACTCCACCTCAGACTCTGACCTCGTGCGCTACCGAACCATTAGCAAGATACCCCAAATCACCCTCAACTTTGTGGACCTCAAAGGCGACCCTTTCCTGGCTTCACCCACCAGTGACCGGGAAATCATAGCACCCAAGATAAAAGAGCGGACCCACAATGTCACCGAGAAGGTCACCCAG
Seq A exon
GTCCTGTCCTTGGGAGCCGATGTGCTTCCTGAATATAAGCTGCAGGCCCCAAGAATACACCGCTGGACCATCCTACACTACAGCCCCTTCAAGGCAGTGTGGGACTGGCTCATTCTGCTGCTGGTCATCTACACAGCTGTCTTCACACCGTACTCGGCTGCCTTCCTGCTGAAGGAGACTGAAGATGGGTCCCAAGCCCCTGACTGCGGCTATGCCTGCCAGCCTCTGGCTGTAGTGGACCTCCTCGTGGACATCATGTTCATTGTGGACATCCTTATCAATTTCCGCACCACCTACGTTAACGCCAATGAAGAGGTGGTCAGCCATCCTGGCCGCATCGCTGTGCACTACTTCAAGGGCTGGTTCCTCATCGACATGGTGGCTGCCATCCCCTTCGACCTGCTCATCTTTGGCTCTGGCTCTGAGGAG
Seq C2 exon
CTCATCGGACTGCTGAAAACTGCCAGGCTGCTGCGGCTGGTGCGAGTGGCTCGGAAGCTGGACCGCTACTCGGAGTATGGGGCAGCAGTGCTCTTCCTGCTCATGTGCACCTTCGCGCTCATTGCACACTGGTTGGCCTGCATCTGGTACGCCATCGGCAACATGGAACAGCCTCACATGGACTCACACATTGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGAGGCCCCTCCATCAAGGACAAGTACGTCACAGCGCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGCAATGTCTCTCCCAACACCAACTCAGAAAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872-'10-10,'10-9,15-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.6=45.5)
C2:
PF0052026=Ion_trans=FE(62.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGGAAATCATAGCACCC
R:
AGTAGAGCGCTGTGACGTACT
Band lengths:
358-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]