DreEX6026924 @ danRer10
Exon Skipping
Gene
ENSDARG00000029881 | kcnh2a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2a [Source:ZFIN;Acc:ZDB-GENE-070912-699]
Coordinates
chr2:24451576-24502194:+
Coord C1 exon
chr2:24451576-24451787
Coord A exon
chr2:24498303-24498725
Coord C2 exon
chr2:24501789-24502194
Length
423 bp
Sequences
Splice sites
3' ss Seq
TGAAGTCTTTTCCTCCTCAGGTT
3' ss Score
8.98
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGCCATGCACCGCAAAGCCAGCTTACAGAATGCTACTTCTGACTCAGATCTCATTCGGCTCCGGAGCTCAGGTCGGGGCACCCAAATATCACACAACTTAATAGATATGAAGCCGGACGCATTAATTGCAGTCCCCACCGGTGAGATTGACATCATCGCCCCCTGCAAGCTGATCGACCGGACCCATAATGTGACAGAGAAGGTCACTCAG
Seq A exon
GTTCTGTCTCTGGGTGCAGATGTCCTTCCTGAGTATAAGCTCCAGGCTCCCCGCATCCACAAATGGACTATCTTACACTACAGCCCATTCAAGGCGGTCTGGGACTGGGTTATCCTGCTGCTGGTCATCTACACGGCCATCTTCACTCCTTATTCGGCTGCGTTCCTGCTTAGCGATGAGGAAGAAGAAGTCATTCAGCGCTGTGGATACTCCTGCAGTACACTCAATGTGGTGGACCTCATTGTAGACATCATGTTTGTAGTGGACATTGTGATTAACTTTCGTACAACCTACGTGAACAGTAACGATGAAGTGGTCAGTCAGCCCGGCCGGATCGCCGTCCACTATTTTAAAGGCTGGTTCCTCATTGACATGGTTGCTGCCATTCCCTTCGACTTGCTCATTTACCGCTCTGAAGAAGAG
Seq C2 exon
ACCACGACATCCACAACTCTGATTGGCCTGCTGAAAACAGCTCGGTTGCTGCGATTGGTGCGTGTGGCACGCAAACTTGACCGCTACTCTGAGTATGGAGCTGCTGTTCTCTTTCTGCTCATGTGTACCTTTGCTCTGATCGCCCATTGGCTGGCCTGCATCTGGTATGCGATTGGGAACGTGGAGAGAAGCGGCCCATCTCGAATCGGTTGGCTTAATTCTTTGGGTGATCAGCTGGGAAAGCCATATAATTCATCAGTACGTGGATCAGGACCCTCTATTAAAGATAAATATGTCACTGCCCTGTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGAAACGTCTCCCCAAACACAAACTCAGAGAAGATCTTCTCCATCTGTGTGATGCTCATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029881-'4-7,'4-6,9-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=36.9),PF0052026=Ion_trans=PU(30.3=45.4)
C2:
PF0052026=Ion_trans=FE(64.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTGACATCATCGCCCCC
R:
AGGGTCCTGATCCACGTACTG
Band lengths:
346-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]