MmuEX0025035 @ mm9
Exon Skipping
Gene
ENSMUSG00000038319 | Kcnh2
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
Coordinates
chr5:23831312-23836940:-
Coord C1 exon
chr5:23836729-23836940
Coord A exon
chr5:23832167-23832595
Coord C2 exon
chr5:23831312-23831699
Length
429 bp
Sequences
Splice sites
3' ss Seq
CCTCGTCACCCACACCTTAGGTC
3' ss Score
7.01
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GGGCCATGCACCCCCTGCGCAGTGGCCTGCTTAACTCCACCTCAGACTCTGACCTTGTACGCTACCGAACCATTAGCAAGATACCCCAAATCACTCTCAACTTTGTGGACCTCAAAGGCGACCCTTTCCTGGCTTCACCCACCAGTGACCGGGAGATTATAGCACCCAAGATAAAAGAGCGGACCCACAATGTCACCGAGAAGGTCACCCAG
Seq A exon
GTCCTGTCCTTGGGAGCAGATGTGCTGCCTGAGTATAAGCTGCAGGCCCCAAGAATCCACCGCTGGACCATCCTCCACTACAGCCCCTTCAAGGCGGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACGGCAGTCTTCACACCGTACTCGGCCGCCTTCCTGCTGAAGGAGACTGAAGATGGGTCCCAAGCCCCTGACTGTGGCTACGCCTGCCAGCCCCTGGCTGTAGTGGACCTCATCGTGGACATCATGTTCATTGTGGACATCCTTATCAATTTCCGTACCACCTATGTTAATGCCAACGAGGAGGTGGTTAGCCATCCTGGCCGCATTGCTGTGCACTACTTCAAGGGCTGGTTTCTCATTGACATGGTGGCTGCCATCCCCTTCGACCTGCTCATCTTTGGCTCTGGCTCCGAGGAG
Seq C2 exon
CTGATCGGGCTGCTGAAAACTGCGAGGCTGCTGCGGCTGGTGCGCGTGGCTCGGAAGCTGGACCGCTACTCGGAGTACGGGGCAGCAGTGCTCTTCCTGCTCATGTGCACCTTCGCCCTCATTGCGCACTGGTTGGCCTGCATCTGGTACGCGATCGGCAACATGGAACAGCCTCACATGGACTCACACATCGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGAGGCCCCTCCATCAAGGACAAGTATGTCACAGCGCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGCAATGTCTCTCCCAACACCAACTCAGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038319-'6-8,'6-6,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.6=45.5)
C2:
PF0052026=Ion_trans=FE(62.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTGTACGCTACCGAACC
R:
GTGTGAGTCCATGTGAGGCTG
Band lengths:
351-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: