BtaEX6029473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004078 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr4:114331552-114337911:-
Coord C1 exon
chr4:114337700-114337911
Coord A exon
chr4:114332658-114333086
Coord C2 exon
chr4:114331552-114331939
Length
429 bp
Sequences
Splice sites
3' ss Seq
CACCTTCCCCGCCTGCCCAGGTC
3' ss Score
8.14
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GGGCCATGCACCCCCTGCGCAGCGGCCTGCTTAACTCCACCTCTGATTCGGACCTCGTGCGCTACCGCACCATCAGCAAGATCCCCCAGATCACCCTCAACTTCGTGGATCTCAAGGGCGACCCCTTCCTGGCTTCGCCCACCAGCGACAGGGAGATCATAGCCCCTAAGATAAAGGAGCGGACCCACAACGTCACCGAGAAGGTCACCCAG
Seq A exon
GTCCTGTCCCTGGGGGCTGACGTGCTGCCGGAGTACAAGCTGCAGGCGCCCCGCATCCACCGCTGGACCATCCTGCACTACAGCCCCTTCAAGGCCGTGTGGGACTGGCTCATCCTGCTCCTGGTCATCTACACCGCGGTCTTCACCCCCTACTCAGCCGCCTTCCTGCTGAAGGAGACTGAAGAGGCGCCCCTGGCCCCCGACTGTGGCTACGCCTGCCAGCCGCTGGCTGTGGTGGACCTCATCGTCGACATCATGTTCATCGTGGACATCCTCATCAACTTCCGCACCACCTACGTCAACGCCAACGAGGAGGTGGTCAGCCACCCCGGCCGCATCGCCGTCCACTACTTCAAGGGCTGGTTCCTCATTGACATGGTGGCCGCCATCCCCTTTGACCTGCTCATCTTCGGCTCTGGCTCCGAGGAG
Seq C2 exon
CTGATTGGGCTGCTGAAGACGGCGCGGCTGCTGCGGCTGGTACGTGTGGCCCGGAAGCTGGACCGATACTCGGAGTATGGGGCGGCCGTGCTCTTTCTGCTCATGTGCACCTTCGCACTCATCGCGCACTGGCTGGCCTGCATCTGGTACGCCATAGGCAACATGGAGCAGCCGCATATGGACTCCCGCATCGGCTGGCTGCACAACCTGGGCGATCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGCGGCCCCTCCATCAAAGACAAGTATGTCACCGCCCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTCGGCAACGTGTCCCCCAACACCAACTCGGAGAAGATCTTTTCCATCTGTGTCATGCTCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004078-'7-6,'7-5,11-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF084125=Ion_trans_N=WD(100=36.4),PF0052026=Ion_trans=PU(31.6=45.5)
C2:
PF0052026=Ion_trans=FE(62.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAAAGGAGCGGACCCACA
R:
GTGAGGCTGCTGAAGGTGAAG
Band lengths:
355-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]