DreEX6017686 @ danRer10
Exon Skipping
Gene
ENSDARG00000060192 | rpusd1
Description
RNA pseudouridylate synthase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-444]
Coordinates
chr3:35414987-35415491:+
Coord C1 exon
chr3:35414987-35415110
Coord A exon
chr3:35415195-35415297
Coord C2 exon
chr3:35415390-35415491
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATATATATGTCCTCCTCAGGTG
3' ss Score
8.87
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTTTTGCCATCAGTTGGATTTCTCCACCAGTGGTGCTTTGTGTGTTGCTCTGAATAAGGCGGCAGCAGGTCAAGCGTATCGCTGTTTTAAAGACAGACGGGTTACCAAAGCTTATCTAGCACTG
Seq A exon
GTGCGTGGTACTGTGACTGAGGAGAATCTGAGCCTGGATTTCGCAATTGGCAAGAACACCACGGAGGGCAAAACCCATATGATGTGCACTGAAGGAACGGAGG
Seq C2 exon
GTTGTGAGAATCCAAAGCCATGCCAAACAGAGGTCACAGTTTTAGAGTACGGCACGTATGATGGAGATCCAGTCACAAAAGTGCTTCTGCAGCCTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060192-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.029
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(24.7=100)
A:
PF0084917=PseudoU_synth_2=FE(20.5=100)
C2:
PF0084917=PseudoU_synth_2=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTCTCCACCAGTGGT
R:
CTGTCAGAGGCTGCAGAAG
Band lengths:
212-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]