RnoEX6046663 @ rn6
Exon Skipping
Gene
ENSRNOG00000023639 | Rpusd1
Description
RNA pseudouridylate synthase domain containing 1 [Source:RGD Symbol;Acc:1304934]
Coordinates
chr10:15099971-15100618:+
Coord C1 exon
chr10:15099971-15100094
Coord A exon
chr10:15100275-15100377
Coord C2 exon
chr10:15100517-15100618
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGATGTCCTTGCTCAACAGGTC
3' ss Score
10.03
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
GTTCTGCCACCAACTGGACTTCTCCACCAGCGGGGCGCTGTGCGTGGCCCTGAATAAAGCAGCTGCGGGCAGCGCTTATAAGTGCTTCAAGGAGCGACGAGTTACCAAAGCCTACCTGGCACTG
Seq A exon
GTCCGAGGCCATGTCCAGGAAAGCCAAGTGACGATCAACTATGCCATTGGCAGGAACAGCACAGAGGGGCGGACCCACACCATGTGCATTGAGGGCACTCATG
Seq C2 exon
GTTGTGAGAACCCTAAGCCAAGTCTCACAGAGCTGCTGGTCCTGGAACATGGGTTATATTCTGGTGACCCTGTGTCCAAAGTGCTGCTGAAGCCACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023639-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0160011=Corona_S1=FE(30.4=100),PF0084917=PseudoU_synth_2=FE(24.7=100)
A:
PF0160011=Corona_S1=PD(23.7=91.4),PF0084917=PseudoU_synth_2=FE(20.5=100)
C2:
PF0084917=PseudoU_synth_2=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCACCAACTGGACTTCTC
R:
TCAGCAGCACTTTGGACACAG
Band lengths:
211-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]