GgaEX6012412 @ galGal4
Exon Skipping
Gene
ENSGALG00000005315 | RPUSD1
Description
RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
Coordinates
chr14:5982822-5983879:+
Coord C1 exon
chr14:5982822-5982945
Coord A exon
chr14:5983606-5983708
Coord C2 exon
chr14:5983778-5983879
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCTGTCTTTGTAGGTG
3' ss Score
11.99
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTTCTGCCATCAGCTCGACTTCTCCACCAGCGGGGCCCTCTGCGTCGCGCTCAACAAAGCGGCGGCGGGCAGCGCCTACAAGTGCTTCAAGGACCGCCTGGTGACCAAAGCCTACCTGGCCCTG
Seq A exon
GTGAGGGGCCACGTTGACCAGAGCCGTATGACGATCCGCTATGCCATTGGAAAGAACACAGTGGAGGGCATGACCCACATGATGTGCATCGAGGGCACAGAGG
Seq C2 exon
GCTGTGAAAACCCCAAGCCGTGCCAGTCGGAGCTGATTGTGCTCGAGCACGGGTCGTACAGCGGAGATCCTGTAACCAAAGTACTGCTGCAGCCGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005315-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(24.7=100)
A:
PF0084917=PseudoU_synth_2=FE(20.5=100)
C2:
PF0084917=PseudoU_synth_2=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGCCATCAGCTCGACTT
R:
GGCTGCAGCAGTACTTTGGTT
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]