DreEX6019014 @ danRer10
Exon Skipping
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:52990806-52993890:+
Coord C1 exon
chr3:52990806-52990909
Coord A exon
chr3:52993568-52993722
Coord C2 exon
chr3:52993806-52993890
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTAACTGTTTTTACTCCAGGTC
3' ss Score
10.79
5' ss Seq
CCTGTACTG
5' ss Score
-6.49
Exon sequences
Seq C1 exon
CTTGTCCTGATGGGCTTTTTGCTGAGATTGGCAGGTCGAGGGTTGCAAAGGTCATCAAAACTCTCAAGGAGATCAATGTGGCTTTCATACCGTATGAGTCTCAG
Seq A exon
GTCTTCACTCTGGACAACCCCAGTTCCTTCCACGCTTTCTACAGCCCAACTCAGACTAATCTAGATGACAAGAGCAGAATGATGGAGGCCATGGCTGAGCAGATCGCCACTCTCTGTGACACGCTGACGGAGTATCCAGCCATCCGATACCGCCT
Seq C2 exon
GGGGCCAAAGGAGAATTTCAGCCTGGCTGAGATGGTGATGGATCGTCTGAATGCACACAAAGCAGACAATCCCAGAATGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.172
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(17.3=100)
A:
PF0099518=Sec1=FE(26.0=100)
C2:
PF0099518=Sec1=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGATGGGCTTTTTGCT
R:
TCTGGGATTGTCTGCTTTGTGT
Band lengths:
178-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]