GgaEX1056308 @ galGal3
Exon Skipping
Gene
ENSGALG00000007196 | STXBP1
Description
NA
Coordinates
chr17:2827828-2828909:+
Coord C1 exon
chr17:2827828-2827931
Coord A exon
chr17:2828431-2828579
Coord C2 exon
chr17:2828825-2828909
Length
149 bp
Sequences
Splice sites
3' ss Seq
CCCCCTGCTGCCCTCCCCAGGTT
3' ss Score
11.13
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
CCTGCCCCGATGCCCTGTTCAATGAGCTGGTGAAGTCCCGTGCTGCCAAAGTCATCAAGACCCTGACTGAGATCAACATCGCCTTCCTGCCCTCCGAGTCCCAG
Seq A exon
GTTTACTCCCTGGATTCAGCAGACTCCTTCCAAAGCTTCTACAGCCCTCACAAGGCGCAGATGAAGAACCCGATCCTGGAGAGGCTGGCAGAGCAGATTGCCACTCTGTGTGCCACACTGAAGGAGTACCCGGCCGTGCGGTACCGCGG
Seq C2 exon
GGACTACAAGGACAACGCCATGCTGGCGCAGCTCATCCAGGACAAGCTGGATGCCTACAAGGCTGATGACCCCACTATGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007196-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(7.4=100)
A:
PF0099518=Sec1=FE(10.7=100)
C2:
PF0099518=Sec1=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATGCCCTGTTCAATGAG
R:
CCATAGTGGGGTCATCAGCCT
Band lengths:
179-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]