MmuEX6100634 @ mm9
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32667541-32672909:-
Coord C1 exon
chr2:32672806-32672909
Coord A exon
chr2:32670399-32670547
Coord C2 exon
chr2:32667541-32667625
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCTCTGTCGCTCCAGGTG
3' ss Score
11.17
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CGTGTCCAGATGCCCTATTTAACGAGCTGGTAAAATCCCGAGCAGCCAAAGTCATCAAGACGCTGACGGAAATCAACATTGCGTTTCTCCCCTATGAGTCCCAG
Seq A exon
GTGTATTCCCTGGACTCCGCTGACTCTTTCCAAAGCTTCTACAGCCCTCACAAGGCGCAGATGAAGAATCCGATACTGGAACGCCTGGCAGAGCAGATCGCAACCCTGTGTGCCACCCTGAAGGAGTATCCAGCTGTGCGGTATCGGGG
Seq C2 exon
GGAGTACAAGGACAATGCCTTGCTGGCTCAGCTGATCCAGGACAAGCTGGATGCCTATAAAGCCGACGATCCAACAATGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.1=100)
A:
PF0099518=Sec1=PU(6.9=96.7)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGATGCCCTATTTAACGA
R:
CTCCCCCATTGTTGGATCGTC
Band lengths:
188-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: