RnoEX0087350 @ rn6
Exon Skipping
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11846366-11854185:-
Coord C1 exon
chr3:11854082-11854185
Coord A exon
chr3:11850960-11851108
Coord C2 exon
chr3:11846366-11846450
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGGCTTGTCGCCCCTAGGTG
3' ss Score
11
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CATGTCCAGATGCCCTGTTTAACGAGCTGGTAAAATCTCGAGCAGCCAAAGTCATCAAGACGCTGACGGAAATCAACATTGCGTTTCTCCCCTATGAGTCCCAG
Seq A exon
GTGTATTCCCTGGACTCCGCTGACTCTTTCCAAAGTTTCTACAGCCCTCACAAGGCACAGATGAAGAATCCCATACTGGAACGCCTGGCAGAGCAAATCGCCACCCTGTGTGCCACCCTGAAGGAGTACCCGGCTGTGCGGTATCGGGG
Seq C2 exon
GGAGTACAAGGACAATGCCTTGCTGGCTCAGCTGATCCAGGACAAGCTGGACGCTTATAAAGCTGATGACCCGACAATGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420-'16-19,'16-18,20-19
Average complexity
S
Mappability confidence:
91%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.1=100)
A:
PF0099518=Sec1=FE(8.8=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGATGCCCTGTTTAACG
R:
CTCCCCCATTGTCGGGTCATC
Band lengths:
187-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]