DreEX6083588 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13792502-13800219:+
Coord C1 exon
chr21:13792502-13792605
Coord A exon
chr21:13798989-13799137
Coord C2 exon
chr21:13800135-13800219
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGCGTGTTTAGGTG
3' ss Score
10.5
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CTTGCCCTGACCCCCTGTTTAATGAAGTGGTGAAGAGCCGTGCCTCCAAAACCATTAAAACCCTAAATGAGATCAACATCGCCTTCCTGCCCTACGAGTCCCAG
Seq A exon
GTGTTTTCTTTGGACAACCCTGACGCCTTCCAGAGTTTCTACAGCCCTCATAAGACACAGCTGAAGAACCCTGTGATGGAACGGCTGGCAGAGCAGCTGGCAACTCTGTGTGCCACACTGAAGGAGTACCCGGCCGTCAGATACAGAGG
Seq C2 exon
GGAGTATAAAGATAACGCCACTCTGGCTCAGTTGCTTCAGGACAAACTGGACGCCTACAAGGCAGATGATCCTACAATGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.310
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.1=100)
A:
PF0099518=Sec1=FE(8.8=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCTGACCCCCTGTTTAA
R:
CCCCCATTGTAGGATCATCTGC
Band lengths:
186-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]