BtaEX6046262 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98366156-98370185:+
Coord C1 exon
chr11:98366156-98366259
Coord A exon
chr11:98368214-98368362
Coord C2 exon
chr11:98370101-98370185
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATATATTTCCCCTTTTTCAGGTG
3' ss Score
11.23
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTTGTCCAGATGCCCTGTTTAACGAGCTGGTAAAATCTCGAGCAGCCAAAGTCATCAAGACTCTGACGGAAATCAACATTGCATTTCTCCCATATGAATCCCAG
Seq A exon
GTGTATTCCTTGGACTCTGCTGACTCTTTCCAAAGCTTCTACAGTCCCCACAAGGCTCAGATGAAGAATCCGATCCTGGAGCGCCTGGCGGAGCAGATCGCAACTCTGTGCGCCACCCTGAAGGAGTACCCAGCCGTGCGGTACCGGGG
Seq C2 exon
GGAATACAAGGACAACGCTTTGCTGGCTCAGCTAATCCAGGACAAGCTCGACGCCTACAAAGCCGATGACCCGACGATGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.1=100)
A:
PF0099518=Sec1=FE(8.8=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGATGCCCTGTTTAACG
R:
CTCCCCCATCGTCGGGTC
Band lengths:
187-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]