MmuEX6100634 @ mm10
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32812021-32817389:-
Coord C1 exon
chr2:32817286-32817389
Coord A exon
chr2:32814879-32815027
Coord C2 exon
chr2:32812021-32812105
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCTCTGTCGCTCCAGGTG
3' ss Score
11.17
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CGTGTCCAGATGCCCTATTTAACGAGCTGGTAAAATCCCGAGCAGCCAAAGTCATCAAGACGCTGACGGAAATCAACATTGCGTTTCTCCCCTATGAGTCCCAG
Seq A exon
GTGTATTCCCTGGACTCCGCTGACTCTTTCCAAAGCTTCTACAGCCCTCACAAGGCGCAGATGAAGAATCCGATACTGGAACGCCTGGCAGAGCAGATCGCAACCCTGTGTGCCACCCTGAAGGAGTATCCAGCTGTGCGGTATCGGGG
Seq C2 exon
GGAGTACAAGGACAATGCCTTGCTGGCTCAGCTGATCCAGGACAAGCTGGATGCCTATAAAGCCGACGATCCAACAATGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797-'26-13,'26-12,33-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.1=100)
A:
PF0099518=Sec1=FE(14.2=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGATGCCCTATTTAACGA
R:
CTCCCCCATTGTTGGATCGTC
Band lengths:
188-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types