HsaEX0062736 @ hg19
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:11445]
Coordinates
chr19:7705786-7707004:+
Coord C1 exon
chr19:7705786-7705889
Coord A exon
chr19:7706591-7706739
Coord C2 exon
chr19:7706920-7707004
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCCTCCTCGCCCAGGTG
3' ss Score
10.33
5' ss Seq
CAAGTGGGG
5' ss Score
0.53
Exon sequences
Seq C1 exon
CCTGCCCCGAGCCCCTGTTCAGTGAGCTAGGCCGCTCTCGTCTGGCAAAGGTGGTGAAGACGTTGAAGGAGATTCACCTTGCCTTCCTCCCCTACGAGGCCCAG
Seq A exon
GTGTTCTCCCTCGATGCTCCCCACAGCACCTACAACCTCTACTGCCCCTTCCGGGCAGAGGAGCGCACGCGGCAGCTCGAGGTGCTGGCCCAGCAGATTGCCACGCTGTGCGCCACCCTGCAGGAGTACCCGGCCATCCGCTACCGCAA
Seq C2 exon
GGGCCCAGAGGACACAGCCCAGTTGGCCCACGCCGTCCTGGCCAAGCTGAACGCCTTCAAGGCAGACACTCCCAGTCTGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-'10-15,'10-13,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PD(3.2=2.9),PF0099518=Sec1=FE(29.6=100)
A:
PF0099518=Sec1=FE(42.6=100)
C2:
PF0099518=Sec1=FE(24.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGAGCCCCTGTTCAG
R:
AGACTGGGAGTGTCTGCCTTG
Band lengths:
178-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)