DreEX6020666 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10424118-10427337:-
Coord C1 exon
chr6:10427173-10427337
Coord A exon
chr6:10426962-10427087
Coord C2 exon
chr6:10424118-10424225
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCCGTCTGTTGTGTAACAGGCA
3' ss Score
8.95
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGACAAGACACTTACTGAAACTCTTTGACAATCTGGCTGACCTCAGCTTTAAGGAAGAGAAAGACAATGGAGAATTAGATCCCCAGACAACTATTGCCTTGGGAATGTACAGTAGAGAGGGAGAGTATGTGCCCTTCTCACAGCCCTGTGTGTGTGAGGGACAG
Seq A exon
GCAGAGTGTTGGCTGAATGCTCTGGAGAAGGCCATGTGCTCTACTGTTCGGCAGGAGATCTCTGAAGCTGTGGCCGCATATGAAGACAAGCCAAGAGATCAGTGGCTGTTTGACTACCCAGCACAG
Seq C2 exon
GTGGCGTTGACTGGAAGCCAAATATGGTGGGCGACAGATGTGGGCATTGCTTTTGAGAGGGTGGAGGAAGGTTTTGAGACTGCCCTGAAAGACTACAACCGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.9=100)
A:
PF083938=DHC_N2=PD(6.5=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAATCTGGCTGACCTCA
R:
TCGGTTGTAGTCTTTCAGGGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]