GgaEX0010146 @ galGal3
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9749954-9750889:+
Coord C1 exon
chr18:9749954-9750106
Coord A exon
chr18:9750572-9750697
Coord C2 exon
chr18:9750782-9750889
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCACAGATCCACACACACAGGTG
3' ss Score
3.09
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTGTCCCGTCACCTCTCGAAGCTGTTTGACAGTCTCGCTAAGCTGAAGTTCAAGATGAGCCCGGACAAAAAGCCGCTGAAGACGGCCCTGGGGATGTTCAGCAAAGAGGAGGAGTTTGTGCCGCTGAGCGCAGAGTGCGATCTGTCCGGGCAG
Seq A exon
GTGGAGGTGTGGCTGAACCGCGTGCTGGACAGCATGCGCTCCACGCTGCGGCACCTGATCCCCGAGGCCGTGGCCAGCTATGAGGACAAGCCACGGGAGCAGTGGGTGTTTGACTACCCGGCACAG
Seq C2 exon
GTTGCTCTGACCTGCACCCAGATCTGGTGGACCACAGAAGTCGGCATGGCCTTCGCAAGGCTGGAGGAGGGCTATGAAAATGCAATTAAGGACTACAACAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(13.3=100)
A:
PF083938=DHC_N2=PD(7.2=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCGTCACCTCTCGAAG
R:
CCTTAATTGCATTTTCATAGCCCTCC
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]