MmuEX0014979 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118090716-118093671:-
Coord C1 exon
chr11:118093519-118093671
Coord A exon
chr11:118091394-118091519
Coord C2 exon
chr11:118090716-118090823
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGAGTGAGGTCTTTCCCCAGGTG
3' ss Score
4.4
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTGAGCCGCCACCTGTCCAAGCTCTTCGACAGCCTGTGTAAGCTCAAGTTCCGCCTTGACGCTAGTGGAAAGCCACTCAAGTTTGGGCTGGGGATGTACAGCAAGGAGGACGAGTTTGTGGACTTTGATAAGGAGTGTGACCTCTCCGGGCAG
Seq A exon
GTGGAAGTGTGGCTGAATCGCGTGCTGGACCGAATGCGCGCCACGTTGCGCCACGAAATTCCAGAAGCCGTGGTGACTTACGAGGAGAAACCGAGGGAACAATGGATCTTTGACTACCCGGCCCAG
Seq C2 exon
GTGGCGCTGACATGCACGCAGATCTGGTGGACGACGGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGCTACGAAAACGCCATCAAAGACTACAACAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
PF083938=DHC_N2=PD(6.5=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTCCAAGCTCTTCGAC
R:
TGTTGTAGTCTTTGATGGCGT
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types