RnoEX0028479 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107099516-107101470:-
Coord C1 exon
chr10:107101318-107101470
Coord A exon
chr10:107100196-107100321
Coord C2 exon
chr10:107099516-107099602
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGTGTGAGGTCTTTCCCCAGGTG
3' ss Score
6.1
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTGAGCCGCCACCTGTCCAAACTCTTCGACAGTCTGTGTAAGCTCAAGTTCCGCCTTGATGCTAGCGGAAACCCGATCAAGGTCGGGCTGGGGATGTACAGCAAGGAAGACGAATACATGGATTTCGATAAGGAGTGTGACCTCTCGGGGCAG
Seq A exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGTGCCACGTTGCGCCACGAAATCCCAGAAGCTGTGGTGACTTACGAGGAGAAGCCCAGGGAGCAATGGATCTTTGACTACCCGGCCCAG
Seq C2 exon
ATCTGGTGGACGACTGAGGTGGGCCTGGCGTTCGCAAGGCTGGAGGAAGGATATGAAAACGCCATCAAAGACTACAACAAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'32-37,'32-35,33-37
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
PF083938=DHC_N2=PD(6.5=64.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCACCTGTCCAAACTCTTC
R:
CTGCTTTTTGTTGTAGTCTTTGATGG
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]