DreEX6020681 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10408746-10410651:-
Coord C1 exon
chr6:10410501-10410651
Coord A exon
chr6:10409016-10409147
Coord C2 exon
chr6:10408746-10408919
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTGTATGTATCTAGACT
3' ss Score
6.36
5' ss Seq
CATGTCAGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
GTATGTGACAAGCTGGATAGACACACGTCAGGCCCAGTCCGAGCGAGCAAATCTCACTATATTGTTCGACAAGTATGTTCCCTACTGTCTGGAGCAGGTCAGATGCAACCTTAAGACGATCACACCTATACCTGAGACAAGCATGGTACAG
Seq A exon
ACTCTGTGTTGTCTGCTGGACTGCTTGCTGACTGATGAAAACACACCTCCAGACTCTCCTCGTGAACTCTATGAGCTCTACTTTGTGTTTGCAAGTGTTTGGGCCTTTGGAGGAGCTCTTTTTCAGGACCAT
Seq C2 exon
CTAATAGACTATCGTTCAGAGTTCAGTCGTTGGTGGTGTAAGGAGATGAGAGCGGTGAAGTTTCCTTCTCAAGGTTCAGTGTTTGATTACTACATCGACCCAAACACCAAGCGCTTCACGCCATGGAGCGAACGCACACCTCCCTTTGAGCTGGAGCCTGACATCCCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTACTGTCTGGAGCAGG
R:
CTGCAAAGGGATGTCAGGCTC
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]