BtaEX0011573 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30594320-30605907:+
Coord C1 exon
chr4:30594320-30594470
Coord A exon
chr4:30597996-30598127
Coord C2 exon
chr4:30605734-30605907
Length
132 bp
Sequences
Splice sites
3' ss Seq
GGCTTTTTCTTTTTCTTTAGACT
3' ss Score
9.15
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTATGTGGCCAGTTGGATAGACAGAAGGCGGCATCAGTCAGAAAAGGCCAATTTAACAATTCTTTTTGATAAATACGTTCCTGCCTGCTTGGAAAAGCTGAGAACAAGCTTTAAAACCATCACTTCAATTCCAGAGAGCAGCCTGGTGCAG
Seq A exon
ACTATTTGTACTCTTCTGGAGTGTTTATTGACTCCTGAAAATGTACCTTCTGACAGCCCAAAGGAAGTTTATGAGGCCTACTTTGTCTTTGCTTGTATCTGGGCGTTCGGAGGCACTCTGCTACAAGATCAG
Seq C2 exon
CTTTCTGGTTGTCAAGCTGAATTCAGTCAGTGGTGGCATAAAGAGATGAAAGCAGTGAAGTTTCCATCCCAGGGAACAATTTTTGATTATTATCTGGACCACAAAAGTAAGAAGTTTTTGCCTTGGGCTGATAAAATCCCCCAATTTACTATGGATCCAGAAATACCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACGTTCCTGCCTGCTTGG
R:
CTGCAAAGGTATTTCTGGATCCA
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development