RnoEX6030082 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145931111-145937772:-
Coord C1 exon
chr6:145937622-145937772
Coord A exon
chr6:145934595-145934726
Coord C2 exon
chr6:145931111-145931284
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTTCTTTTTCTTTAGACA
3' ss Score
8.25
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTATGTGGCCAGTTGGATAGACAGAAGGCGGCATCAATCAGAAAAGGCCAATTTAACTATTCTTTTTGATAAATACATTCCCGTGTGCTTGGAGAAGCTAAGAACTAGCTTTAAAGCCATCACTTCTGTTCCAGAGAGCAGCCTGGTGCAG
Seq A exon
ACAATTTGTACTCTTTTGGAGTGTTTGCTGACTCCAGAGAACATACCTTCTGACAGTCCTAAAGAGACCTATGAGGTCTATTTTGTCTTCGCTTGTGTCTGGACATTTGGAGGCACCCTACTACGAGATCAG
Seq C2 exon
CTTTCTGATTACCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTCCCCCAGTTCACCATGGATGCAGATGCGCCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'58-59,'58-58,59-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTCCCGTGTGCTTGGAG
R:
CGCATCTGCATCCATGGTGAA
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]