MmuEX6083433 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118023810-118030410:-
Coord C1 exon
chr12:118030260-118030410
Coord A exon
chr12:118027448-118027579
Coord C2 exon
chr12:118023810-118023983
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGTGTTTTCTTTTTCTTCAGACT
3' ss Score
8.65
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTATGTGGCCAGTTGGATAGACAGAAGACGGCATCAATCAGAAAAGGCCAATTTAACTATTCTTTTTGATAAATACATTCCTGTGTGCTTGGAGAAGCTAAGAACGAGCTTTAAAGCCATCACTTCGGTTCCAGAGAGCAGCCTGGTGCAG
Seq A exon
ACTATTTGTACTCTTTTGGAGTGTTTGTTGACTCCCGAGAACATACCTCCTGACAGTCCTAAAGAGACCTATGAAGTCTATTTTGCCTTTGCTTGTGTCTGGACATTTGGAGGCACCCTACTACGGGATCAG
Seq C2 exon
CTTTCTGATTATCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTTCCCCAGTTCTCCATGGATGCTGATGCGCCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'54-54,'54-53,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCTGTGTGCTTGGAGA
R:
CGCATCAGCATCCATGGAGAA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types