DreEX6040395 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19488537-19490294:-
Coord C1 exon
chr16:19490144-19490294
Coord A exon
chr16:19489033-19489164
Coord C2 exon
chr16:19488537-19488710
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCACATCTCTCTCTACCAGACT
3' ss Score
8.8
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTCTGTTATGAGTTGGATTGATCGCAGAGAGAGACAAACTGAGAGAGCACACTTGACCATTCTGTTTGACAAATACATCCCTCGCTGTATAGAAAAAATGAGAAGCTCCTTTAAGACCATCATTCCTATTCCTGAGAACAGCATGGTTCAG
Seq A exon
ACTCTGTGCTCCCTGCTGGATTGTCTGTTAACTCCTGAAAACATCCCAGCGGATTCTCCAAGGGAACTGTATGAGATGTACTTTGTTTTTGCCTGTGTGTGGGCTTTTGGTGGAGCAACCGTCCAGGATCAG
Seq C2 exon
CTTCATGACTATCGGGCTGAGTTCAGCCAGTGGTGGATCAAAGAGATGAAGAGTGTGAAGTTTCCTGTCCAGGGCTCTGTGTTTGACTTCTGCTTAGATCCTCACTCCAAACGCTTTGTGCCCTGGACCGACAGGATACCTGCTTTTGAGATGGACCCCGATATACCTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAATACATCCCTCGCTGT
R:
GGGGTCCATCTCAAAAGCAGG
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]