DreEX6020693 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10386854-10389404:-
Coord C1 exon
chr6:10389258-10389404
Coord A exon
chr6:10387157-10387270
Coord C2 exon
chr6:10386854-10386997
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATCCTTATCCTTATATCAGGTG
3' ss Score
7.62
5' ss Seq
AGGGTCTGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
GTGGAGGATCTGAAGGCTAAACTGGCCATACAGGAAGTGGAGCTGCATCTAAGAAACACTGATACTGAAGCTCTCATTGCTAAAATTGGCCAGCAGAGTGAGAAACTCAGTCAGGAGAGGAGCGTTGCAGATGCAGAGGAGAAAAAG
Seq A exon
GTGGAAGCGATCCAAGCAGAAGTGACCAAACAGCAGCAGGAGACGGAAGCTGACCTGGAGAAAGCCGAGCCAGCTCTACAGGCAGCAAATGCAGCCCTCAACACACTCAACAGG
Seq C2 exon
CTGAATCTGACAGAGCTGCGGACGTTTCCGAATCCTCCTGCCATCGTATCGAATGTGACTGCAGCTGTTTTGGTGCTCTTGTCTCCTAATGGCCGTATCCCTAAAGACCGCAGCTGGAAAGCATCTAAAGTTGTCATGAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'53-55,'53-54,54-55=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.553 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
PF127772=MT=FE(10.7=100)
C2:
PF127772=MT=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCCATACAGGAAGTGGA
R:
GCTTTCCAGCTGCGGTCTTTA
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]