BtaEX6026604 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30661824-30673154:+
Coord C1 exon
chr4:30661824-30661970
Coord A exon
chr4:30670513-30670626
Coord C2 exon
chr4:30673011-30673154
Length
114 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTCTTCTTTGATTAGGTG
3' ss Score
8.95
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GTGGGAGAGCTGAAAGCCAGACTTGCCTCTCAAGAAGCTGAGTTACAACTGAGAAATCAGGATGCTGAAGCTCTGATCGCAAAGATGGGGCTTCAGACAGAGAAACTGAGCCGGGAAAAGGCCATCGCCGACGCCGAGGAGCGAAAG
Seq A exon
GTGACAGCCATTCAGACTGAAGTGTCCCAGAAACAGAGGGAGTGTGAGGCAGACTTACTGAAAGCTGAGCCCGCGCTGGTGGCTGCGACAGCTGCCCTCAATACACTCAACAGG
Seq C2 exon
GTCAATCTCACTGAGCTGAAAGCCTTTCCCAACCCTCCAAATGCAGTCACCAATGTTACTGCGGCTGTGATGGTCCTTCTGGCTCCCCGGGGCAGAGTGCCGAAAGACCGGAGTTGGAAAGCAGCAAAAGTCTTCATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'70-73,'70-72,71-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
PF127772=MT=FE(10.7=100)
C2:
PF127772=MT=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAGACTTGCCTCTCAA
R:
TGCTTTCCAACTCCGGTCTTT
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]