DreEX6040409 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19434888-19437868:-
Coord C1 exon
chr16:19437722-19437868
Coord A exon
chr16:19437518-19437631
Coord C2 exon
chr16:19434888-19435031
Length
114 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTTTTCATTTTTAGGTG
3' ss Score
11.66
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
GTGGAGGATCTGACAGTAAAGCTGAACTCTCAGGAAGTGGAGCTGACAATGAAGAACCAGGCAGCTGAGGCTCTTATGGCCAGAATTGGCCTGCAGACAGAGAGAGTGAGCCAGAAGAGAGAAGACGCAGACCTGGAGGAGCAGAAG
Seq A exon
GTGGCTGCTATGCAAGCAGAGGTGTCCCGAAGACTAAAAGAATGTGAAAAGGATTTGGCTAAAGCTGAACCTGCTTTAGATGCAGCTACAGCTGCTCTCCAAACACTCAACAAG
Seq C2 exon
GTAAATCTGACAGAGTTAAAGACGTTCCCGAATCCCCCGGAGGCTGTGATTAACGTCACAGCGGCTGTGATGGTTCTTTTGGCTCCACGTGGGCAAATTCCTAAAGACCGGGGGTGGAAGGCTGCCAGAGTCTTCATGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
PF127772=MT=FE(10.7=100)
C2:
PF127772=MT=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGAACCAGGCAGCTGAG
R:
CTTGCCCATGAAGACTCTGGC
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]