MmuEX6083444 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117975727-117983095:-
Coord C1 exon
chr12:117982949-117983095
Coord A exon
chr12:117978458-117978571
Coord C2 exon
chr12:117975727-117975870
Length
114 bp
Sequences
Splice sites
3' ss Seq
TAATTATCCTCTCTAATCAGGTG
3' ss Score
9.02
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
GTGGGAAATCTGAAGTCCAGGCTAGCCTCTCAAGAGGCTGAGTTGCAGCTCAGAAACCTCGATGCCGAGGCCCTGATCACAAAGATTGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCGGACGCGGAGGAGCGAAAG
Seq A exon
GTGGCTGCCATTCAAACTGAAGCATCCCAGAAGCAGAGAGAGTGTGAAGCTGACTTACTCAAGGCTGAGCCTGCCCTGGTGGCTGCTAAGGATGCACTCAATACACTCAACAGG
Seq C2 exon
GTGAACCTCACAGAACTGAAAACGTTCCCCAACCCCCCAAATGCTGTTACCAATGTAACCGCAGCTGTGATGGTCCTACTGGCCCCCCGAGGCAGAGTGCCAAAAGACCGAAGTTGGAAAGCAGCTAAAATCTTCATGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'74-68,'74-67,75-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
PF127772=MT=FE(10.7=100)
C2:
PF127772=MT=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGCTAGCCTCTCAAGA
R:
GCTGCTTTCCAACTTCGGTCT
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types