RnoEX0028422 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145875530-145882783:-
Coord C1 exon
chr6:145882637-145882783
Coord A exon
chr6:145878234-145878347
Coord C2 exon
chr6:145875530-145875673
Length
114 bp
Sequences
Splice sites
3' ss Seq
TAACTGCCCTCTCTGATCAGGTG
3' ss Score
10.02
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
GTGGGAAATCTGAAGGCCAGGCTGGCCTCTCAAGAAGCTGAGCTGCAGCTCAGAAACCAGGACGCCGAGGCCCTGATCACAAAGATCGGGCTTCAGACGGAGAAAGTGAGCCGGGAAAAGGCCATCGCAGATGCAGAGGAGCGAAAG
Seq A exon
GTGGCCGCCATTCAAACTGAAGCGTCCCAGAAGCAGAGGGAGTGCGAGGCTGACTTACTCAAGGCTGAGCCCGCCCTGGTCGCTGCTACAGCTGCACTCAATACACTCAACAGG
Seq C2 exon
GTAAACCTCACAGAACTGAAAACCTTCCCCAACCCCCCAAATGCTGTTACCAATGTAACTGCAGCTGTGATGGTCCTTCTGGCCCCCCGAGGCAGAGTGCCAAAAGACAGAAGTTGGAAAGCAGCCAGAATCTTCATGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'74-74,'74-73,75-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
PF127772=MT=FE(10.7=100)
C2:
PF127772=MT=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCAAGAAGCTGAGCTGC
R:
TGGCTGCTTTCCAACTTCTGT
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]