DreEX6020699 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10368689-10372850:-
Coord C1 exon
chr6:10372686-10372850
Coord A exon
chr6:10369294-10369434
Coord C2 exon
chr6:10368689-10368859
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTGTGCTTTTGTAGGTG
3' ss Score
9.47
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
TCGGAGTTGACTAAACAGCAGAACATGTTTAAGATTGAGTTAAAGCAGCTTGAGGATGAGTTACTGACTCGTCTCTCTGCGGCGGAAAGTAACTTCCTTGGAGACAACGTTCTGGTGGAGAAACTGGAAAGCACTAAACATACTGCTGCCGAGATCGAGATGAAG
Seq A exon
GTGTTGGAAGCGAAGGTTAATGAGGTGAAGATTAACGAGGCTCGTGAACACTACCGGCCTGTGGCTGTCAGAGCGTCCCTCCTATACTTCATCATCAATGACCTTAACAAGATCAACCCCATGTACCAGTTTTCCCTCAAG
Seq C2 exon
GCATTTAATGTTGTCTTCCATAAAGCCGTGCAGAATGCAGACGCCTCTGCAGATGTAAAGATTCGTGTGAACACACTGATAGATTGCATCACCTTTTCTACATTTAATTACATCAACAGAGGCTTATTTGAGAGAGATAAACTAACCTTCGCAGCACAGCTTACTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'64-67,'64-66,65-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGGCGGAAAGTAACTT
R:
AAGCTGTGCTGCGAAGGTTAG
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]