BtaEX6026596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30742730-30753277:+
Coord C1 exon
chr4:30742730-30742894
Coord A exon
chr4:30746119-30746259
Coord C2 exon
chr4:30753107-30753277
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGCTCCCACCATAGGTG
3' ss Score
9.33
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGGTTCTGACAAAGCACCAAAATGACTTTAAGATAGAGCTGAAGTACCTGGAGGACGACCTCCTTCTGCGTCTCTCTGCAGCAGAAGGGAGCTTTCTAGATGACACCAAACTGGTAGAGAGACTGGAGAGGGCAAAGGCCACTGCAGCCGAGATAGAGTGCAAG
Seq A exon
GTGACTGAAGCTAAAGAAAATGAAAGAAAAATCAACGAGGCCCGAGAATGTTACAGACCAGTGGCAGCAAGAGCATCTCTTCTATATTTTGTGATTAATGACCTCAGAAAAATCAACCCCATCTATCAATTCTCTTTGAAG
Seq C2 exon
GCTTTCAACATGCTGTTCCACAGAGCCATCGAGCAGACTGACAAGGTGGAGGACATGCCGGGGCGCATCTCCGCCCTGACCGAGAGCATCACCCATGCCGTCTTCCTCTACACCAGCCAGGCGCTGTTTGAGAAGGACAAACTCACCTTCCTGTCCCAGATGGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'81-87,'81-86,82-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACCTGGAGGACGACC
R:
CCTGGCTGGTGTAGAGGAAGA
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]