RnoEX0028429 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145823496-145832507:-
Coord C1 exon
chr6:145832343-145832507
Coord A exon
chr6:145829498-145829638
Coord C2 exon
chr6:145823496-145823666
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATCATTTGATCCCATTACAGGTG
3' ss Score
8.04
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTAGTTTTGACCAAGCACCAAAACGACTTTAAGATAGAGCTGAGGCATCTTGAGGAGGACCTTCTCCTGCGCCTCTCTGCTGCAGAGGGGAGCTTCCTGGATGACACGGACCTGGTAGAGCGCCTGGAGACCACCAAGGCCACTGCAGCAGAAATAGAGCACAAG
Seq A exon
GTGATAGAGGCCAGAGAAAATGAGAGAAAAATCAACGAGACCCGTGAGTGCTACAGACCGGTGGCAGCAAGAGCCTCCCTTATGTACTTTGTTATCAGTGACCTCCGGAAAATCAACCCCGTCTACCAGTTCTCTCTGAAG
Seq C2 exon
GCTTTCAAGACACTGTTCCACAGAGCCATTGAGCAAGCTGACAAGGTGGAGGATACTCAGGAGCGCATCTGTGCCCTAATGGAGAGTGTCACCTATGCTACCTTCCTCCATGCCAGCCAAGCACTGTTTGAGAAAGACAAGCTCACATTTCTGTCCCAGATGGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'87-90,'87-87,89-90
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCATCTTGAGGAGGACC
R:
TCTCAAACAGTGCTTGGCTGG
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]