DreEX6040419 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19402774-19405126:-
Coord C1 exon
chr16:19404962-19405126
Coord A exon
chr16:19404590-19404730
Coord C2 exon
chr16:19402774-19402944
Length
141 bp
Sequences
Splice sites
3' ss Seq
ACAGTGTACTGTTTACACAGGCT
3' ss Score
5.31
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTGGAGCTGAGTACTCAGCAGAACTTGTGTCAGATTGAGCTGAAGAGACTTGAGGATGAGCTGTTAAGCAAACTGTCTGCGGCAGAGGGAAACTTCCTGAGAGATACAGCCCTAGTGGAGCAGCTGGAACACACCAAGAACACTGCCAGACACATCCAGAACAAG
Seq A exon
GCTGTTGCAGCTCGAGAGAATGAGATAAAGACCAACGAGGCACGAGATCTCTACAGGCCAGCAGCTGAGAGAGCCGCACTGCTCTACTTCATTATTAAAGAACTTCACAATGTTAATCCCATGTACCAGTACTCCCTCAAG
Seq C2 exon
GCCTTCAACAAAGTGTTCCTAAAAGCTATTGCGAGAGCTCCAAGTGATGAAGATGTATCGGTGCGTGTTTTATCTCTGACCGAGTCCATTACCCATTCAGCCCTTCAGTACACCTGCCAGGGGCTCTTCCAGCGGGACCGACTCACCTTCCTCACCCACACCGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'43-47,'43-46,44-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGCAAACTGTCTGCGGCA
R:
GTGAGGAAGGTGAGTCGGTCC
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]