MmuEX6083452 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117922013-117931298:-
Coord C1 exon
chr12:117931134-117931298
Coord A exon
chr12:117928319-117928459
Coord C2 exon
chr12:117922013-117922183
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTCGCTTGATCCCATTACAGGTG
3' ss Score
6.92
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGGTTTTGACCAAGCAGCAAAATGACTTTAAGATAGAGCTGAGGCAGCTTGAAGACGACCTTCTCCTGCGCCTCTCTGCTGCTGAGGGGAGCTTCCTGGATGACACAGACCTGGTAGAGCGCCTCGAGACGACCAAGGCCACTGCAGCAGAAATAGAGCACAAG
Seq A exon
GTGACAGAAGCCAGAGAAAATGAAAGAAAAATCAATGAGACCCGTGAGTGCTACAGACCAGTGGCAGCGAGAGCATCCCTTCTGTACTTTGTCATCAGTGACCTCAGGAGAATCAACCCCGTCTACCAGTTCTCTCTGAAG
Seq C2 exon
GCTTTCAACACACTGTTCCACAGAGCCATTGAGCAAGCTGACAAGGTGGAGGATACTCAGGAGCGCATCTGTGCCCTAATAGAGAGCATCACCCACGCCACCTTCCTCTATGCCAGCCAAGCACTGTTTGAGAGGGACAAGCTCACATTTCTGTCCCAGATGGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'92-84,'92-82,93-84=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCAGCTTGAAGACGAC
R:
GCTTGGCTGGCATAGAGGAAG
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types