DreEX6020702 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10363866-10366783:-
Coord C1 exon
chr6:10366661-10366783
Coord A exon
chr6:10365570-10365763
Coord C2 exon
chr6:10363866-10364014
Length
194 bp
Sequences
Splice sites
3' ss Seq
ACCTGAATATTGTTCTGTAGACA
3' ss Score
6.69
5' ss Seq
TCGGCAAGT
5' ss Score
4.02
Exon sequences
Seq C1 exon
TTGTTGTTAATGAACAAGGAGGTTGACCCTCGGGAACTGGACTTCCTGCTGCGCTTCAACATTGACCACAGTTATATCAGCCCTCTCGATTTCCTTTCCAACTCAGTCTGGAGTGCTGTTAAA
Seq A exon
ACAATGAGCTTCACTGATGAGTTTCGTGGTCTGGATCGGGACATTGAGGGTTCTCCAAAACGCTGGAAGAAAATGGTGGAGTCAGAGTGTCCAGAAAAAGAGAAACTCCCTCAGGAATGGAAAAGCAAGAGTTCACTCCAGAAACTCATCCTTCTTAGGGCTCTGCGACCTGACCGCATGACGTACGCTGTTCG
Seq C2 exon
GAACTTTGTGGAAGAGAAACTTGGTGTGCAGTACACAGAGGGCAGAAAGATGGAATTTGCACGTTCGTTCAAAGAGTGTGGTCCTGCTTCCCCTGTATTCTTCATCCTGTCCCCTGGAGTGGACCCACTAAAAGATGTCGAGTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'67-70,'67-69,68-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(9.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGGAACTGGACTTCCT
R:
GGGACTCGACATCTTTTAGTGGG
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]