MmuEX6083453 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117915459-117921026:-
Coord C1 exon
chr12:117920904-117921026
Coord A exon
chr12:117916778-117916971
Coord C2 exon
chr12:117915459-117915607
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATGCCGTATTGCAGGCA
3' ss Score
8.25
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATCTTGTTGAGAAGGAACGAGATCCACCCCCTCGAGTTGGATTTCCTGCTTCGGTTCACAGTTGAGCATACTTACTCGAGCCCTGTGGATTTTCTAACTGCTCAGTCATGGAGTGCTGTTAAG
Seq A exon
GCAGTCGCCCTCATGGAGGAATTCCGAGGCTTAGACAGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAATGGGTAGAATCAGAGTGTCCTGAAAAAGAAAAGTTACCGCAAGAATGGAAGAAGAAAAGTTTAATACAGAAACTGATTATTTTGAGAGCCGTGCGGCCTGACAGGATGACGTATGCCCTGAG
Seq C2 exon
GAATTTCGTAGAAGAGAAACTAGGAGCAAAGTATGTGGAGAGGACTAGATTGGACCTGGGCAAAGCATTTGAAGAAAGCAGCCCGAGCACCCCGGTGTTCTTCATCCTGTCTCCAGGTGTGGATGCCCTTAAAGACTTAGAGGTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'95-91,'95-87,96-91=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(9.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGAACGAGATCCACCCC
R:
TTTAAGGGCATCCACACCTGG
Band lengths:
247-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types