RnoEX6030096 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145817681-145822543:-
Coord C1 exon
chr6:145822421-145822543
Coord A exon
chr6:145819002-145819195
Coord C2 exon
chr6:145817681-145817829
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTGTTGCATTGCAGGCA
3' ss Score
10.64
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATCTTGTTGAGAAGGAATGAGATCCACCCCCTCGAGTTGGACTTCCTGCTTCGGTTCACGGTTGAACACACCTACTCGAGCCCTGTTGACTTTCTAACTGCTCAGTCATGGAGTGCTGTTAAG
Seq A exon
GCAGTCGCCCTCATGGAGGAATTCCGAGGCCTAGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAATGGGTAGAGTCCGAGTGCCCGGAAAAAGAAAAGTTACCGCAAGAATGGAAGAAGAAAAGTTTAATACAGAAACTGATTATTTTGAGAGCAGTGCGGCCTGACAGGATGACATATGCCCTGAG
Seq C2 exon
AAATTTTGTAGAGGAGAAGCTAGGTACGAAGTACGTGGAGAGAACGAGATTGGATCTGGGTAAAGCATTTGGAGAAAGCAGCCCAGGCACCCCAGTGTTTTTCATCCTGTCCCCAGGCGTTGATGCCCTTAAAGACTTAGAGGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'92-94,'92-93,93-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(9.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGAGATCCACCCCCTCGA
R:
AGTCTTTAAGGGCATCAACGC
Band lengths:
246-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]