DreEX6040422 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19399639-19402362:-
Coord C1 exon
chr16:19402240-19402362
Coord A exon
chr16:19399946-19400139
Coord C2 exon
chr16:19399639-19399787
Length
194 bp
Sequences
Splice sites
3' ss Seq
AAATGTAATTTTGCTTTTAGAGC
3' ss Score
6.25
5' ss Seq
CCGGTAATG
5' ss Score
6.21
Exon sequences
Seq C1 exon
GTTCTGCTGATGAGAGGCTTCATTGATGGTGAGGATCTAGAGATTCTGCTAAGGTTTCCTGTAGAGATTTGCGAGAGCAGTCCTGTCAGCTTCCTGTCGCCACAGGCCTGGGGTGCTATTAAG
Seq A exon
AGCATCTCCATGCAGGATGCATTCAGAGGTCTGGACAGGGATGTTGAAGGGTCTGCCAAGCGCTGGAAGAAACTGGTGGAGTCTGAGTGTCCAGAAAGAGAGCGGTTCCCTCAGGACTGGAAGACCAAGAGCCCTCTCCAGAGACTCATCATTCTAAGAGCGATCCGGCCTGACAGGATGACCTATGCTCTCCG
Seq C2 exon
AAATTTTATTGAGGACAGTTTGGGACCCAAGTATGTGCACATCAGTCATATGGAGTTTGAAAAATGTTTTGAGGAGTGCAGTCCAACAACACCAGTGTTCTTCATCCTTTCTCCTGGAGTCAATCCGGTCAAAGATGTAGAAAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'46-52,'46-49,47-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
PF0302810=Dynein_heavy=FE(9.1=100)
C2:
PF0302810=Dynein_heavy=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGCTGATGAGAGGCTTCA
R:
GACCGGATTGACTCCAGGAGA
Band lengths:
253-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]