BtaEX6026593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30756283-30759373:+
Coord C1 exon
chr4:30756283-30756405
Coord A exon
chr4:30757840-30758033
Coord C2 exon
chr4:30759225-30759373
Length
194 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCCATTTTATCACAGGCG
3' ss Score
6.32
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
ATTTTGCTGAGAAATAAAGAGATAGATCATCTTGAATTGGATTTCCTGCTTCGGTTCACAGTTGAACACACTTACCAGAGTCCTGTTGATTTCCTCACTAATCAATCATGGAGTGCTATTAAG
Seq A exon
GCGGTCGCCCTCATGGAAGAGTTTCGAGGCCTCGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAGTGGGCAGAATCCGAGTGTCCAGAAAAGGAAAAGTTGCCACAAGAATGGAAGAAGAAAAGTTTAATACAGAAGCTGATTATTTTGAGAGCAATGCGCCCTGACAGAATGACATATGCTCTCAG
Seq C2 exon
GAATTTCGTGGAGGAGAAACTGGGTGCCAAGTATGTAGAGAGGACCAGATTGGACTTGGTTAAAGCATTTGAGGAGAGCAGCCCCGCCACCCCCATATTCTTCATCCTCTCTCCAGGAGTAGATGCCCTCAAAGACCTGGAGATACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'84-91,'84-90,85-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(10.2=48.8)
A:
PF0302810=Dynein_heavy=FE(32.5=100)
C2:
PF0302810=Dynein_heavy=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCTTGAATTGGATTTCCTGCT
R:
ATCTCCAGGTCTTTGAGGGCA
Band lengths:
242-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]