DreEX6020705 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10358308-10363123:-
Coord C1 exon
chr6:10362896-10363123
Coord A exon
chr6:10358597-10358788
Coord C2 exon
chr6:10358308-10358427
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACATGTCTGTTCATGCGTAGGAC
3' ss Score
7.99
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
AACATTCACCTGGTGGCAAAGTGGCTGGGAAATCTAGAGAAGCTTCTGGAACATTGCTGTGAAGACAGTCATCAAGACTACAGAGTGTTCATGAGCGCTGAACCCTCACCCACTCCGCAGGAGCATATCATTCCACAGGGAATTCTGGAAAATTCCATCAAGATCACTAACGAGCCTCCCACAGGCATGCTGGCCAACCTGCACGCTGCTTTGGACAACTTTGATCAG
Seq A exon
GACATTCTGGACCAGTGTTCCCGTGAGCAGGAGTTTAAGACCATCCTGTTCTCGCTGTGTTATTTCCACGCCTGTGTGGCTGAGAGACGCAAATTTGGACCGCAGGGCTGGAACAGGAAGTACCCATTCAACACCGGAGATCTCACCATATCAGTCAACGTGCTCTACAACTACCTAGAAGCAAACTCACAG
Seq C2 exon
GTGCCGTGGGAAGACCTTCGCTACTTGTTTGGTGAGATCATGTATGGAGGCCACATTACCGATGACTGGGACAGGAGACTGTGCAGAACTTACCTGGAAGAGTACATGCAGCCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'71-74,'71-73,72-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=FE(8.9=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTCATGAGCGCTGAACC
R:
GGCTGCATGTACTCTTCCAGG
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]