GgaEX6019213 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NTA2]
Coordinates
chr2:30676811-30680713:+
Coord C1 exon
chr2:30676811-30676895
Coord A exon
chr2:30676907-30677004
Coord C2 exon
chr2:30680606-30680713
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGCCAGCGGACTCTTTTAGCCT
3' ss Score
-0.15
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GATAACCTTGAACTGTGTGGCAAAGAACAGGAGTTTAAGAGCATCCTTTTCTCTCTTCGTGATTTTCACACTCATGTTGCCAGCG
Seq A exon
CCTTCCAGGCTGCAAACAAAAAAAGATACCCATTCAGTACTAGAGGTCTCATTGTTTGCATCAGAGTCCCTTGCAACTATTTAGGCACTCTCACAGAG
Seq C2 exon
ATTCTGCAGGAGGATTTGGGTTGTCTGTTTGGTGGCCACACCACCAGTGCCTGGGACTGCCGGCTCTGCTTCATACATTTGCCAGAATTCATCACCTTGTCTGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010906-'7-8,'7-7,8-8=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.1=100)
A:
PF0302810=Dynein_heavy=FE(11.6=100)
C2:
PF0302810=Dynein_heavy=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGCAAAGAACAGGAGT
R:
AGACAAGGTGATGAATTCTGGCA
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]