DreEX6040426 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19391963-19397925:-
Coord C1 exon
chr16:19397698-19397925
Coord A exon
chr16:19397140-19397331
Coord C2 exon
chr16:19391963-19392082
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTGTGTTTTGCAGGAT
3' ss Score
12.61
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AATATCCACCTGCTATCACAGTGGTTGAGTCGTCTGGAGGAGATGTTGGAGAACACGGCTAGCAATGCTCACTCAAACTACAGAGTGTTCATGAGTGGAGAACCAGCTCCCAATCCACATGAGCATCTAATCCCTCGCACCATCCTGGAGAACTCTCTCAAACTCACCACTGAACCCCCAACTGGCATGAACTCTACCTTACATGCTGCTCTGGACAACTTCAGCAAG
Seq A exon
GATACTCTGGAAATGTGTTCTCGAGAGCAGGAGTTTAAAGGACTCATGTTCTCGCTGTGTTACTTCCATGCCTGTGTGAGTGAGAGGCGGAAGTTTGGACCTCAGGGTTGGAACCACAAATACCCATTCAACAATGGAGATCTGAATATTTCAGCTAATGTTCTGTACAACTACCTGGAGGCCAGTACCAAA
Seq C2 exon
GTACCATGGGAGGATCTTTGTTATCTGTTTGGAGAGATCATATATGGAGGACACATCACTGATGAGAGAGACAGGATGCTCTGCCGCACGTACCTTCAGGAGTTCATCAATCCCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'51-57,'51-56,52-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=FE(10.3=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTAGCAATGCTCACTCAA
R:
GGCAGAGCATCCTGTCTCTCT
Band lengths:
258-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]