MmuEX6083455 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117894951-117911245:-
Coord C1 exon
chr12:117911018-117911245
Coord A exon
chr12:117903102-117903293
Coord C2 exon
chr12:117894951-117895070
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTCTTTCCTCTCAGGAT
3' ss Score
11.65
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
AATGTTCATCTGGTAGCCAAATGGCTGGGAACTCTGGAGAAACTCCTTGAAAAATTCAGTCAAGGAAGCCACAGAGATTACAGGGTGTTCCTGAGTGCTGAGACTGTACCTTCCCAACATGAGCCCATAATCCCTCAAGGCCTCCTGGAAAATTCCATTAAGATCACTAACGAGCCCCCCACGGGAATGCTGGCCAACCTACATGCTGCTTTGTACAACTTTGACCAG
Seq A exon
GATACACTTGAGATGTGTTCCAAAGATCAGGAGTTTAAAAGCATCCTCTTCTCTCTGTGCTACTTCCATGCCTGTGTGGCAGGGAGACTGAGGTTCGGTCCCCAGGGCTGGAGCCGAAGCTATCCTTTCAGTCCTGGAGACCTGACTATCTGCACCAACATCCTCTACAACTACTTAGAGGCAAACCCGAAC
Seq C2 exon
GTCCCATGGGAAGACCTCCGTTACCTCTTTGGGGAGATCATGTATGGGGGCCACATCACAGATGCCTGGGATCGAAAACTATGCCGGGTGTATCTAGAAGAATTCATGAATCCATCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=FE(8.9=100)
C2:
PF0302810=Dynein_heavy=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGGGAACTCTGGAGAAA
R:
TCCCCAAAGAGGTAACGGAGG
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types