DreEX6020788 @ danRer10
Exon Skipping
Gene
ENSDARG00000074723 | myo10l1
Description
myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
Coordinates
chr6:10910824-10911354:-
Coord C1 exon
chr6:10911341-10911354
Coord A exon
chr6:10911039-10911123
Coord C2 exon
chr6:10910824-10910930
Length
85 bp
Sequences
Splice sites
3' ss Seq
GATCTGATCTCTTCTTCCAGAAT
3' ss Score
9.13
5' ss Seq
AGGGTGAAT
5' ss Score
2.65
Exon sequences
Seq C1 exon
ATTTACTTGAAAAG
Seq A exon
AATCGAGTGGTAAGGCAGAATCCAGGAGAGAGGAACTACCATATATTTTATGCTTTGCTGGCTGGGGCTAGTAAAAGCGAAAAGG
Seq C2 exon
AAACATATTTTCTGGAAGACTCCCCGGAGTTATTTCATTACTTGAGTCAGTCAGGATGTGTGAAGGACCGCAGTCTCGATGACAAGAAGCTTTTTGATGATGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074723-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(0.6=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]