RnoEX6009026 @ rn6
Exon Skipping
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:77986832-77989959:+
Coord C1 exon
chr2:77986832-77986968
Coord A exon
chr2:77988400-77988484
Coord C2 exon
chr2:77989856-77989959
Length
85 bp
Sequences
Splice sites
3' ss Seq
AATTTGGTTTCTCCTCACAGAAC
3' ss Score
8.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCCGATCATGGAAGCATTTGGCAATGCGAAGACCGTATACAACAACAACTCCAGCCGCTTTGGGAAGTTTGTTCAACTGAACATCTGTCAGAAAGGAAACATTCAGGGCGGAAGAATTGTAGATTGTATCCTGTTTC
Seq A exon
AACCGAGTAGTGAGGCAAAACCCCGGGGAGAGGAATTATCACATATTCTATGCACTGCTGGCAGGGCTGGACCAGGGAGAACGAG
Seq C2 exon
AAGAGTTTTATTTATCTTTGCCAGAAAACTATCATTACTTGAATCAGTCTGGGTGTACAGAAGACAAGACAATCAGCGACCAGGAGTCGTTCAGACAAGTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161-'12-12,'12-11,14-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTTTGGGAAGTTTGTTC
R:
ACTCCTGGTCGCTGATTGTCT
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]